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Streamline Dockerfile, remove unused deps

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* Dockerfile: Use non-root user, buildx cache, setup for readonly
   container, remove unused apt deps.
   For now don't install pip package and keep development flask server
   as this will be replaced in the future (fastapi). Then a proper
   webserver (e.g. nginx) should be used and the pip package can be
   created and deployed just to the run-stage (with the webserver).
 * docker-compose: Set to readonly (anonymous volumes declared in
   Dockerfile should maintain all writable data).
   Mount config.py for easier development. Should be replaced by
   environment support for all config file variables.
 * Remove unused runtime dependencies: mariadb, joblib, pytest,
   pytest-cov.
 * Move pytest-cov to dev dependencies.
 * Add output_dir to config.py.
 * Fix visualization_results.pdf endpoint.
 * Update docs.
This commit is contained in:
Dominique Lasserre
2024-10-07 20:56:10 +02:00
committed by Andreas
parent 86639b9437
commit a71eab3bd0
12 changed files with 65 additions and 51 deletions
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24
Makefile
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@@ -7,15 +7,16 @@ all: help
# Target to display help information
help:
@echo "Available targets:"
@echo " venv - Set up a Python 3 virtual environment."
@echo " pip - Install dependencies from requirements.txt."
@echo " pip-dev - Install dependencies from requirements-dev.txt."
@echo " install - Install EOS in editable form (development mode) into virtual environment."
@echo " docker-run - Run entire setup on docker
@echo " docs - Generate HTML documentation (in build/docs/html/)."
@echo " run - Run flask_server in the virtual environment (needs install before)."
@echo " dist - Create distribution (in dist/)."
@echo " clean - Remove generated documentation, distribution and virtual environment."
@echo " venv - Set up a Python 3 virtual environment."
@echo " pip - Install dependencies from requirements.txt."
@echo " pip-dev - Install dependencies from requirements-dev.txt."
@echo " install - Install EOS in editable form (development mode) into virtual environment."
@echo " docker-run - Run entire setup on docker"
@echo " docker-build - Rebuild docker image"
@echo " docs - Generate HTML documentation (in build/docs/html/)."
@echo " run - Run flask_server in the virtual environment (needs install before)."
@echo " dist - Create distribution (in dist/)."
@echo " clean - Remove generated documentation, distribution and virtual environment."
# Target to set up a Python 3 virtual environment
venv:
@@ -71,4 +72,7 @@ test:
# Run entire setup on docker
docker-run:
@docker compose up
@docker compose up --remove-orphans
docker-build:
@docker compose build