* Mypy: Initial support
* Add to pre-commit (currently installs own deps, could maybe changed
to poetry venv in the future to reuse environment and don't need
duplicated types deps).
* Add type hints.
* Mypy: Add missing annotations
* Dockerfile: Use non-root user, buildx cache, setup for readonly
container, remove unused apt deps.
For now don't install pip package and keep development flask server
as this will be replaced in the future (fastapi). Then a proper
webserver (e.g. nginx) should be used and the pip package can be
created and deployed just to the run-stage (with the webserver).
* docker-compose: Set to readonly (anonymous volumes declared in
Dockerfile should maintain all writable data).
Mount config.py for easier development. Should be replaced by
environment support for all config file variables.
* Remove unused runtime dependencies: mariadb, joblib, pytest,
pytest-cov.
* Move pytest-cov to dev dependencies.
* Add output_dir to config.py.
* Fix visualization_results.pdf endpoint.
* Update docs.
AndreasandAndreas
Dominique LasserreandGitHub
Bobby NoelteandAndreas