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Consolidates the currently applicable dependency updates into one PR, including the closed Dependabot backlog such as #1241, plus dependency surfaces that were not covered by the repository's previous pip-only Dependabot configuration. Cleanup of test warnings. Most importent: * GitPython + pypdf security hardening. * Uvicorn WebSocket close/backpressure/header fixes for server/dashboard reliability. * FastAPI dependency-memory/OpenAPI improvements for the API process. * Bokeh WebSocket/resource-leak/prefix fixes for EOSdash and proxied deployments. * cachebox cancellation/lock cleanup fixes for long-running/concurrent work. * pandas 3.0.5 avoiding the yanked 3.0.4 datetime/segfault build. * Ruff security-lint and pydocstyle correctness fixes, plus faster release builds via PGO. * platformdirs malformed-XDG and duplicate-directory fixes for deployment portability. * CI action modernization, regenerated uv.lock, and expanded Dependabot coverage. Runtime dependencies cachebox: 6.1.2 → 6.2.2 fastapi: 0.139.2 → 0.141.1 python-fasthtml: 0.14.9 → 0.14.11 MonsterUI: 1.0.46 → 1.0.47 bokeh: 3.9.1 → 3.9.2 uvicorn: 0.51.0 → 0.52.4 (build(deps): bump uvicorn from 0.51.0 to 0.52.3 #1241, refreshed to latest patch) pandas: 3.0.3 → 3.0.5 platformdirs: 4.11.0 → 4.11.3 Development/test dependencies pandas-stubs: 3.0.3.260530 → 3.0.5.260730 types-PyYAML: 6.0.12.20260518 → 6.0.12.20260724 GitPython: 3.1.53 → 3.1.58 (security/fix releases) coverage: 7.15.2 → 7.15.4 pypdf: 6.14.2 → 6.16.1 (includes security fixes) Pre-commit/tooling ruff-pre-commit: v0.15.21 → v0.16.3 synchronize pandas-stubs, types-docutils, and types-PyYAML pins with pyproject.toml CI / repository dependencies Python 3.13.9 → 3.13.15 in CI, Docker, .env, and local Docker Make targets actions/checkout → v7 in pytest, pre-commit, CodeQL, and release workflows actions/setup-python → v7 in pytest, pre-commit, and release workflows actions/upload-artifact → v7 in pytest workflow actions/stale: v9.1.0 → v11.0.0 (SHA-pinned) regenerate uv.lock from the final dependency pins so locked/frozen installs match pyproject.toml Future update coverage Expand Dependabot from pip-only to also monitor: GitHub Actions Docker The existing open docutils 0.23 update (#1085) is intentionally excluded because it has separate compatibility/ignore handling and should remain isolated. docker-build.yml was audited and is already using the newer action generations, so no changes were needed there. --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
102 lines
4.6 KiB
YAML
102 lines
4.6 KiB
YAML
# For most projects, this workflow file will not need changing; you simply need
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# to commit it to your repository.
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#
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# You may wish to alter this file to override the set of languages analyzed,
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# or to provide custom queries or build logic.
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#
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# ******** NOTE ********
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# We have attempted to detect the languages in your repository. Please check
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# the `language` matrix defined below to confirm you have the correct set of
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# supported CodeQL languages.
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#
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name: "CodeQL Advanced"
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on:
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push:
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branches: [ "main" ]
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pull_request:
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branches: [ "main" ]
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schedule:
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- cron: '20 7 * * 1'
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jobs:
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analyze:
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name: Analyze (${{ matrix.language }})
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# Runner size impacts CodeQL analysis time. To learn more, please see:
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# - https://gh.io/recommended-hardware-resources-for-running-codeql
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# - https://gh.io/supported-runners-and-hardware-resources
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# - https://gh.io/using-larger-runners (GitHub.com only)
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# Consider using larger runners or machines with greater resources for possible analysis time improvements.
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runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
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permissions:
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# required for all workflows
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security-events: write
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# required to fetch internal or private CodeQL packs
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packages: read
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# only required for workflows in private repositories
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actions: read
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contents: read
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strategy:
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fail-fast: false
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matrix:
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include:
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- language: actions
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build-mode: none
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- language: python
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build-mode: none
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# CodeQL supports the following values keywords for 'language': 'actions', 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'rust', 'swift'
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# Use `c-cpp` to analyze code written in C, C++ or both
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# Use 'java-kotlin' to analyze code written in Java, Kotlin or both
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# Use 'javascript-typescript' to analyze code written in JavaScript, TypeScript or both
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# To learn more about changing the languages that are analyzed or customizing the build mode for your analysis,
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# see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning.
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# If you are analyzing a compiled language, you can modify the 'build-mode' for that language to customize how
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# your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
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steps:
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- name: Checkout repository
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uses: actions/checkout@v7
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# Add any setup steps before running the `github/codeql-action/init` action.
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# This includes steps like installing compilers or runtimes (`actions/setup-node`
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# or others). This is typically only required for manual builds.
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# - name: Setup runtime (example)
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# uses: actions/setup-example@v1
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# Initializes the CodeQL tools for scanning.
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- name: Initialize CodeQL
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uses: github/codeql-action/init@v4
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with:
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languages: ${{ matrix.language }}
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build-mode: ${{ matrix.build-mode }}
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# If you wish to specify custom queries, you can do so here or in a config file.
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# By default, queries listed here will override any specified in a config file.
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# Prefix the list here with "+" to use these queries and those in the config file.
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# For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
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# queries: security-extended,security-and-quality
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# If the analyze step fails for one of the languages you are analyzing with
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# "We were unable to automatically build your code", modify the matrix above
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# to set the build mode to "manual" for that language. Then modify this step
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# to build your code.
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# ℹ️ Command-line programs to run using the OS shell.
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# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
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- name: Run manual build steps
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if: matrix.build-mode == 'manual'
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shell: bash
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run: |
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echo 'If you are using a "manual" build mode for one or more of the' \
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'languages you are analyzing, replace this with the commands to build' \
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'your code, for example:'
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echo ' make bootstrap'
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echo ' make release'
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exit 1
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- name: Perform CodeQL Analysis
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uses: github/codeql-action/analyze@v4
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with:
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category: "/language:${{matrix.language}}"
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